All documentation for the workshop is best viewed from the github.io pages
Single Cell RNA-Seq Analysis
Jul.25, 2022 - Jul. 29, 2022 Remotely exclusive to Makerere University Kampala Uganda.
Contact - Dr. Matthew Settles
This five-day remote workshop covers experimental design, data generation, and analysis of single cell RNA sequencing data. Participants will explore a single cell experiment using the command line and R, create and modify workflows, and diagnose and treat problematic data utilizing high performance computing services. The primary packages used for analysis will be 10x software for sequence reads to counts, and the R package Seurat for downstream analysis.
FAQ
What are the prerequisites? … To get the most out of this course, please complete the prerequisite material in command line and R before the course, and contact us with any questions.
What do I need? … You will need access to a computer with a reliable connection to the internet, a current versions of R version and Rstudio installed, and a terminal application.
Questions
If you have any questions, use the Discussions page, I’ll get to them as fast as I can